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SeelViz - Javascript Visualizations of Clarity Brains

SeelViz: Data Visualization of Clarity Brain Images

SeelViz (short for Clarity Visualization) is a collection of tools used to analyze and visualize CLARITY-treated brains. This website is maintained to provide deliverables (see here) of our weekly progress as well as extensive documentation regarding our projects (see here). Upload files here to perform processing on our web server (in alpha).

Graph Explanations

Shown above is an example output of a density false-colored for Control 258 generated by ClarityViz. The colorations correspond to the number of edges for each node (an edge-number-to-color mapping can be seen here. Each unique color represents a 5% increase in total number of nodes, with the most-connected node being the white node. The original source code can be seen here.    

  Shown above is an example output of the Control258 brain with each region as designated by the atlas a unique colored. Controls along the side allow for toggling the traces on/off. See here for implementation details.    

    Shown above is an example output of the Control258 brain with each edge highlighted in cyan. The edges were determined by an epsilon ball radius of 25. See here for implementation details.

About Us

Albert Lee           Jon Liu           Tony Sun         Luke Zhu

Albert Jon Tony Luke

 

Acknowledgements

JHU BME neurodata.io deisseroth lab